Curriculum Vitae

Öğretim Elemanının
Unvanı, Adı ve Soyadı
Yrd.Doç.Dr. Özkan Ufuk NALBANTOĞLU
Doğum Tarihi
(Gün/Ay/Yıl)
02/04/1982
Dahili Telefon No
Kişisel İnternet Sayfası
E-Posta Adresi
[email protected]
Özgeçmiş / CV
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Curriculum
Vitae
Full Name:
Özkan Ufuk NALBANTOĞLU
Date & Place of Birth:
04/02/1982, Erciş
Office Contact:
Academic Title &
Department:
Assistant Professor, Computer Engineering Department
Academic Qualifications:
B.S. Bogaziçi University, Electrical and Electronics Engineering 2004
Ph.D. University of Nebraska-Lincoln, Electrical Engineering 2011
Post-Doc University of Nebraska-Lincoln, Electrical Engineering 2013
Academic Interests:
Bioinformatics, Machine learning, information theory.
Research Projects:
"Identification of Biological Materials of Unknown Origin", NIH, 5K25AI068151,
2006-2012
"ATD: Algorithms for the analysis of microbiomes", NSF, NSF:1043089, 2011- 2014
Elements of Electrical Engineering
Teaching/Lectures:
Probability theory
Machine learning
Administrative Positions:
Publications :
Papers published in international journals indexed in SCI:
1) Nalbantoğlu Ö.U., Cakar A., Dogan H., Abaci N., Ustek D., Sayood K., Can H.,
"Metagenomic Analysis Of The Microbial Community In Kefir Grains", FOOD
MICROBIOLOGY, vol.41, pp.42-51, 2014
2) Nalbantoğlu Ö.U., Way S.F., Hinrichs S.H., Sayood K., "Raiphy: Phylogenetic
Classification Of Metagenomics Samples Using Iterative Refinement Of Relative
Abundance Index Profiles", BMC BIOINFORMATICS, vol.12, 2011
3) Nalbantoğlu Ö.U., Russell D.J., Sayood K., "Data Compression Concepts And
Algorithms And Their Applications To Bioinformatics", ENTROPY, vol.12, pp.34-52,
2010
4)Nalbantoğlu Ö.U., Sayood K., Dempsey M.P., Iwen P.C., Francesconi S.C.,
Barabote R.D., Xie G., Brettin T.S., Hinrichs S.H., Fey P.D., "Large Direct Repeats
Flank Genomic Rearrangements Between A New Clinical Isolate Of Francisella
Tularensis Subsp Tularensis A1 And Schu S4", PLOS ONE, vol.5, 2010
Papers published in international conferences:
Compression
of
Quality
Factors
in
Next
Generation
SequencingDOI:10.1109/DCC.2014.46 Conference: 2014 Data Compression
Conference (DCC)
Books and Book Chapter:
Nalbantoğlu Ö.U., Sayood K., "Data Compression", in: Computing Handbook, Third
Edition: Computer Science and Software Engineering, Teofilo Gonzales, Jorge
Diaz-Herrera, Allen Tucker, Eds., Chapman and Hall/CRC , Boca Raton, pp.48-148-35, 2014 (Link)
Nalbantoğlu Ö.U., "Dynamic Programming", in: Multiple Sequence Alignment
Methods, David J. Russell, Eds., Springer, London/Berlin, New York, pp.3-27, 2013
Nalbantoğlu Ö.U., Sayood K., "Computational Genomic Signatures", Morgan &
Claypool Publishers, N/A, 2011
Theses:
Ph.D. Dissertation. "COMPUTATIONAL GENOMIC SIGNATURES AND
METAGENOMICS", University of Nebraska-Lincoln College of Engineering Electrical
engineering April, 2011.