Yrd.Doç.Dr. UTKU AVCI - Recep Tayyip Erdoğan Üniversitesi

Yrd.Doç.Dr. UTKU AVCI
ÖZGEÇMİŞ DOSYASI
KİŞİSEL BİLGİLER
Doğum Yılı :
Doğum Yeri :
Sabit Telefon :
Faks :
E-Posta Adresi :
Web Adresi :
Posta Adresi :
1979
Trabzon
T: 46422375181211
F:
[email protected]
EĞİTİM BİLGİLERİ
Doktora, North Carolina State University, College of Agriculture and Life Sciences, , A.B.D., 2003-2007
Lisans, KARADENİZ TEKNİK ÜNİVERSİTESİ, Fen-Edebiyat Fakültesi, Biyoloji, 1996-2000
YAPTIĞI TEZLER
Doktora, "Electron Microscopy Complements Genetic Manipulation for UnderstandingXylem Development", North
Carolina State University College of Agricultural and Life Sciences Crop Science Ağustos, 2007.
YABANCI DİLLER
İngilizce, Çok İyi
AKADEMİK UNVANLAR/GÖREVLER
Yrd.Doç.Dr., RECEP TAYYİP ERDOĞAN ÜNİVERSİTESİ, Mühendislik Fakültesi, 2015 - Devam Ediyor
Diğer, University of Georgia, CCRC, 2008 - 2015
ARAŞTIRMA ALANLARI
Bitki Biyoteknolojisi
Bitki Biyokimyası
Bitkilerin Büyüme ve Gelişimi
Bitki Histolojisi ve Sitolojisi
Bitki Moleküler Genetiği
Endüstriyel Biyoteknoloji
İmmünoloji
Biyoçeşitlilik
SCI,SSCI,AHCI INDEXLERİNE GİREN DERGİLERDE YAYIMLANAN MAKALELER
Raimundo S.C., Avci U. , Hopper C., Pattathil S., Hahn M.G., Popper Z.A., "Immunolocalization of cell wall
carbohydrate epitopes in seaweeds: presence of land plant epitopes in Fucus vesiculosus L. (Phaeophyceae)",
PLANTA, vol.243, pp.337-354, 2016
Sousa L.D.C., Jin M., Chundawat S.P.S., Bokade V., Tang X., Azarpira A., et al.,"Next-generation ammonia
pretreatment enhances cellulosic biofuel production", ENERGY & ENVIRONMENTAL SCIENCE, vol.9, pp.1215-1223, 20
Dutta B., Ha Y., Lessl J.T., Avci U., Sparks A.C., Johnson K.L., et al.,"Pathways of bacterial invasion and watermelon
seed infection by Acidovorax citrulli", PLANT PATHOLOGY, vol.64, pp.537-544, 2015
Du Q., Avci U., Li S., Gallego-Giraldo L., Pattathil S., Qi L., et al.,"Activation of miR165b represses AtHB15 expression
and induces pith secondary wall development in Arabidopsis", PLANT JOURNAL, vol.83, pp.388-400, 2015
Srivastava A.C., Chen F., Ray T., Pattathil S., Pena M.J., Avci U., et al.,"Loss of function of folylpolyglutamate
synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis", BIOTECHNOLOGY FOR
BIOFUELS, vol.8, 2015
Kong Y., Pena M.J., Renna L., Avci U., Pattathil S., Tuomivaara S.T., et al.,"Galactose-Depleted Xyloglucan Is
Dysfunctional and Leads to Dwarfism in Arabidopsis", PLANT PHYSIOLOGY, vol.167, pp.1296-U294, 2015
Muszynski A., O'Neill M.A., Ramasamy E., Pattathil S., Avci U., Pena M.J., et al.,"Xyloglucan, galactomannan,
glucuronoxylan, and rhamnogalacturonan I do not have identical structures in soybean root and root hair cell walls",
PLANTA, vol.242, pp.1123-1138, 2015
Zhang X., Rogowski A., Zhao L., Hahn M.G., Avci U., Knox J.P., et al.,"Understanding How the Complex Molecular
Architecture of Mannan-degrading Hydrolases Contributes to Plant Cell Wall Degradation", JOURNAL OF BIOLOGICAL
CHEMISTRY, vol.289, pp.2002-2012, 2014
Dutta B., Barman A.K., Srinivasan R., Avci U., Ullman D.E., Langston D.B., et al.,"Transmission of Pantoea ananatis
and P-agglomerans, Causal Agents of Center Rot of Onion (Allium cepa), by Onion Thrips (Thrips tabaci) Through
Feces", PHYTOPATHOLOGY, vol.104, pp.812-819, 2014
Hao Z., Avci U., Tan L., Zhu X., Glushka J., Pattathil S., et al.,"Loss of Arabidopsis GAUT12/IRX8 causes anther
indehiscence and leads to reduced G lignin associated with altered matrix polysaccharide deposition", FRONTIERS IN
PLANT SCIENCE, vol.5, 2014
Tan L., Pu Y., Pattathil S., Avci U., Qian J., Arter A., et al.,"Changes in Cell Wall Properties Coincide with
Overexpression of Extensin Fusion Proteins in Suspension Cultured Tobacco Cells", PLOS ONE, vol.9, 2014
Avci U., Pattathil S., Singh B., Brown V.L., Hahn M.G., Haigler C.H., "Cotton Fiber Cell Walls of Gossypium hirsutum
and Gossypium barbadense Have Differences Related to Loosely-Bound Xyloglucan", PLOS ONE, vol.8, 2013
Tan L., Eberhard S., Pattathil S., Warder C., Glushka J., Yuan C., et al.,"An Arabidopsis Cell Wall Proteoglycan Consists
of Pectin and Arabinoxylan Covalently Linked to an Arabinogalactan Protein", PLANT CELL, vol.25, pp.270-287, 2013
Dutta B., Avci U., Hahn M.G., Walcott R.R., "Location of Acidovorax citrulli in Infested Watermelon Seeds Is
Influenced by the Pathway of Bacterial Invasion", PHYTOPATHOLOGY, vol.102, pp.461-468, 2012
Urbanowicz B.R., Pena M.J., Ratnaparkhe S., Avci U., Backe J., Steet H.F., et al.,"4-O-methylation of glucuronic acid in
Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein", PROCEEDINGS OF THE
NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol.109, pp.14253-14258, 2012
Zabotina O.A., Avci U., Cavalier D., Pattathil S., Chou Y., Eberhard S., et al.,"Mutations in Multiple XXT Genes of
Arabidopsis Reveal the Complexity of Xyloglucan Biosynthesis", PLANT PHYSIOLOGY, vol.159, pp.1367-1384, 2012
Kulkarni A.R., Pena M.J., Avci U., Mazumder K., Urbanowicz B.R., Pattathil S., et al.,"The ability of land plants to
synthesize glucuronoxylans predates the evolution of tracheophytes", GLYCOBIOLOGY, vol.22, pp.439-451, 2012
Joshi C.P., Thammannagowda S., Fujino T., Gou J., Avci U., Haigler C.H., et al.,"Perturbation of Wood Cellulose
Synthesis Causes Pleiotropic Effects in Transgenic Aspen", MOLECULAR PLANT, vol.4, pp.331-345, 2011
Demartini J.D., Pattathil S., Avci U., Szekalski K., Mazumder K., Hahn M.G., et al.,"Application of monoclonal
antibodies to investigate plant cell wall deconstruction for biofuels production", ENERGY SCIENCE, vol.4, pp.43324339, 2011
Pattathil S., Avci U., Baldwin D., Swennes A.G., Mcgill J.A., Popper Z., et al.,"A Comprehensive Toolkit of Plant Cell
Wall Glycan-Directed Monoclonal Antibodies", PLANT PHYSIOLOGY, vol.153, pp.514-525, 2010
Wang H., Avci U., Nakashima J., Hahn M.G., Chen F., Dixon R.A., "Mutation of WRKY transcription factors initiates
pith secondary wall formation and increases stem biomass in dicotyledonous plants", PROCEEDINGS OF THE
NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol.107, pp.22338-22343, 2010
Mohnen D., Biswal A., Hao Zhangying , Sholes T., Gelineo-Albersheim I., Hunt K., et al.,"The Bioenergy Science Center
(BESC) and Overcoming Recalcitrance of Populus to Biofuel Production", IN VITRO CELLULAR BIOLOGY-ANIMAL,
vol.46, pp.S48-S48, 2010
Tuomivaara S., Avci U. , O'Neill M., Hahn M.G., York W.S., "Monoclonal antibodies against diverse xyloglucan
structures as probes for plant cell wall chemistry and ultrastructure", FASEB JOURNAL, vol.24, 2010
Livingston D.P., Tuong T.D., Haigler C.H., Avci U., Tallury S.P., "Rapid Microwave Processing of Winter Cereals for
Histology Allows Identification of Separate Zones of Freezing Injury in the Crown", CROP SCIENCE, vol.49, pp.18371842, 2009
Livingston D.P., Tuong T.D., Haigler C.H., Avci U., Tallury S.P., "Rapid Microwave Processing of Winter Cereals for
Histology Allows Identification of Separate Zones of Freezing Injury in the Crown", CROP SCIENCE, vol.49, pp.18371842, 2009
Singh B., Avci U., Inwood S.E.E., Grimson M.J., Landgraf J., Mohnen D., et al.,"A Specialized Outer Layer of the
Primary Cell Wall Joins Elongating Cotton Fibers into Tissue-Like Bundles", PLANT PHYSIOLOGY, vol.150, pp.684-699,
Kong Y., Zhou G., Avci U., Gu X., Jones C., Yin Y., et al.,"Two Poplar Glycosyltransferase Genes, PdGATL1.1 and
PdGATL1.2, Are Functional Orthologs to PARVUS/AtGATL1 in Arabidopsis", MOLECULAR PLANT, vol.2, pp.1040-1050,
2009
Zhao C., Avci U., Grant E.H., Haigler C.H., Beers E.P., "XND1, a member of the NAC domain family in Arabidopsis
thaliana, negatively regulates lignocellulose synthesis and programmed cell death in xylem", PLANT JOURNAL, vol.53,
pp.425-436, 2008
Avci U., Petzold H.E., Ismail I.O., Beers E.P., Haigler C.H., "Cysteine proteases XCP1 and XCP2 aid micro-autolysis
within the intact central vacuole during xylogenesis in Arabidopsis roots", PLANT JOURNAL, vol.56, pp.303-315, 2008
KİTAP VEYA KİTAPLARDA BÖLÜMLER
Avci U., Nakashima J., "A Flat Embedding Method to Orient Thin Biological Samples for Sectioning", in: Plant
Gravitropism, Elison B. Blancaflor, Eds., Springer New York, New York, pp.13-22, 2015
Pattathil S., Avci U., Biswal A., Badhan A.K., "From Plant Cell Walls to Biofuels—Arabidopsis thaliana Model", in:
Handbook of Bioenergy Crop Plants, Chittaranjan Kole, Chandrashekhar P. Joshi, David R. Shonnard, Eds., CRC Press,
Boca Raton, pp.75-97, 2012
Avci U., Pattathil S., Hahn M.G., "Immunological Approaches to Plant Cell Wall and Biomass Characterization:
Immunolocalization of Glycan Epitopes", in: Biomass Conversion Methods and Protocols, Michael E Himmel, Eds.,
Humana Press, New York, pp.73-82, 2012
Pattathil S., Avci U., Hahn M.G., "Immunological Approaches to Plant Cell Wall and Biomass Characterization:
Glycome Profiling", in: Biomass Conversion Methods and Protocols, Michael E. Himmel, Eds., Humana Press, New
York, pp.61-72, 2012
KATILDIĞI BİLİMSEL KONGRE/SEMPOZYUM VE BİLİMSEL TOPLANTILAR
37th Symposium on Biotechnology for Fuels and Chemicals, California, Nisan 2015
Gordon Research Conference on Plant Cell Walls, Massachusetts, Temmuz 2015
The XIIIth Cell Wall Meeting, Nantes, Temmuz 2013
Gordon Research Conference on Plant Cell Walls, Maine, Temmuz 2012
33rd Symposium on Biotechnology for Fuels and Chemicals, Washington, Nisan 2011
XII Cell Wall Meeting, Porto, Temmuz 2010