PDF ( 3 ) - Journal of Microbiology and Infectious Diseases

PDF ( 3 ) - Journal of Microbiology and Infectious Diseases

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JOURNAL of MICROBIOLOGY
and INFECTIOUS DISEASES
pISSN 2146-3158
eISSN 2146-9369
Volume 3
Issue 4
December 2013
Publishes four times a year
Association of Health Investigations
Abbreviation for citation:
J Microbiol Infect Dis
Open Access: www.jmidonline.org
J Microbiol Infect Dis www.jmidonline.org Vol 3, No 4, December 2013
II
J Microbiol Infect Dis www.jmidonline.org Vol 3, No 4, December 2013
JOURNAL of MICROBIOLOGY and INFECTIOUS DISEASES
III
Print ISSN 2146-3158
Online ISSN 2146-9369
Editor-in-Chief
Salih Hoşoğlu, Türkiye
Associate Editors
Ejaz Khan, Pakistan
Reşat Özaras, Türkiye
Nazif Elaldı, Türkiye
Oğuz Karabay, Türkiye
M. Faruk Geyik, Türkiye
Editorial Board
Metin Aytekin, USA
Saim Dayan, Türkiye
Murat Günaydın, Türkiye
Hakan Leblebicioğlu, Türkiye
Recep Öztürk, Türkiye
Contact Person
Prof.Dr. Saim Dayan, Dicle University, Medical Faculty, Department of Microbiology
and Infectious Diseases Diyarbakır- Türkiye
Phone: +90-412 248 80 01 / 4737 and +90-412 248 84 73
Fax: +90-412- 248 84 40
Email: [email protected]
Web Address: www.jmidonline.org
Journal of Microbiology and Infectious Diseases (JMID) is a peer-reviewed medical journal and
published four times a year (March, June, September and December).
JMID is indexed/abstracted in EBSCO, DOAJ, CrossRef, Index Copernicus, Google Scholar and Turk Medline
Copyright © Journal of Microbiology and Infectious Diseases 2013, All rights reserved
Publishing Date: December 2013
Subscription fee: 100 TL (60 $)
Address for requests: Prof.Dr. Salih Hoşoğlu, Dicle University, Medical Faculty, Department of
Microbiology and Infectious Diseases, 21280 Diyarbakır - Türkiye
Printing
M
MEDİSAN
Medisan Yayınevi Ltd.Şti.
Çankırı Cad. 45 / 347 Ulus - Ankara, Türkiye
00 57, Email: [email protected]
J Microbiol Infect Dis Tel : +90 312 311 24 26 – 311
www.jmidonline.org
Vol 3, No 4, December 2013
IV
JMID - Reviewers of Volume 3
ADVISORY BOARD
Abdul Gafur, Chennai, India
Mustafa Kasım Karahocagil, Van, Turkey
Ainura Kutmanova, Bishkek, Kyrgyzstan
Mustafa Kemal Çelen, Diyarbakır, Turkey
Amra Adrovic, Sarajevo, Bosnia&Herzegovina
Mustafa Sünbül, Samsun, Turkey
Aukse Mickiene, Kaunas, Lithuania
Nagwa Khamis, Cairo, Egypt
Ayten Kadanalı, Istanbul, Turkey
Nuri Kiraz, İstanbul, Turkey
Bojana Beovic, Ljubljana, Slovenia
Oğuz Reşat Sipahi, İzmir, Turkey
Biljana Carevic, Belgrade, Serbia
Omar Bagasra, Orangeburg, SC, USA
Canan Agalar, Istanbul, Turkey
Ömer Faruk Kökoğlu, Kahramanmaraş, Turkey
Ejaz Khan, Islamabad, Pakistan
Padman Jayaratne, Hamilton, ON, Canada
Emine Alp, Kayseri, Turkey
Ramin Bayramov, Baku, Azerbaijan
Emin Maden, Konya, Turkey
Regine Hakenbeck, Kaiserslautern, Germany
Hakan Erdem, Istanbul, Turkey
Sead Ahmetagic, Sarajevo, Bosnia&Herzegovina
Haluk Vahaboğlu, Kocaeli, Turkey
Serpil Erol, Erzurum, Turkey
Halil Kurt, Ankara, Turkey
Shahana Urooj Kazmi, Karachi, Pakistan
Hanan Balky, Riyadh, Saudi Arabia
Shaheen Mehtar, Cape Town, South Africa
Hasan Uçmak, Kahramanmaraş, Turkey
Sibel Gündeş, Kocaeli, Turkey
Hürrem Bodur, Ankara, Turkey
Souha S. Kanj, Beirut, Lebanon
İbrahim Çağatay Acuner, İstanbul, Turkey
Süleyman Yazar, Kayseri, Turkey
İftihar Köksal, Trabzon, Turkey
Şaban Esen, Samsun, Turkey
İlhan Özgüneş, Eskişehir, Turkey
Şükran Köse, İzmir, Turkey
Jakhongir Alidjanov, Tashkent, Uzbekistan
Tuna Demirdal, Afyon, Turkey
Mehmet Doğanay, Kayseri, Turkey
Üner Kayabaş, Malatya, Turkey
Mehmet Özden, Elazığ, Turkey
Vedat Turhan, Istanbul, Turkey
Mehmet Parlak, Erzurum, Turkey
Vincent T.K. Chow, Singapore
Meltem Işıkgöz Taşbakan, İzmir, Turkey
Yasmin A. Malik, Kuala Lumpur, Malaysia
Michael L. Tapper, New York, USA
Zülal Özkurt, Erzurum, Turkey
Mira Niyazalieva, Bishkek, Kyrgyzstan
J Microbiol Infect Dis www.jmidonline.org Vol 3, No 4, December 2013
V
JMID - Reviewers of Volume 3
Acknowledgement
Journal of Microbiology and Infectious Diseases thanks to the following reviewers for their
contributions during 2013:
Abdul Ghafur, Chennai, India
Hayati Demiraslan, Kayseri, Turkey
Ahmad Khaldun Ismail, Kuala Lumpur, Malaysia
Hava Yılmaz, Samsun, Turkey
Ahmet Karakaş, Ankara, Turkey
Husnu Pullukcu, İzmir, Turkey
Ali Acar, Istanbul, Turkey
Hüseyin Şener Barut, Tokat, Turkey
Ali Hussein Almarzoqi, Al Hillah, Iraq
Ibrahim Akkurt, Sivas, Turkey
Alper Şener, Çanakkale, Turkey
Ismail Yaşar Avcı, Ankara, Turkey
Amra Adroviç, Sarajevo, Bosnia & Herzegovina
Javier Pemán, Valencia, Spain
Andrew Whitelaw, Tygerberg, S. Africa
Joel Mossong, Luxemburg, Luxemburg
Anil Chander, Kathmandu, Nepal
Mehmet Doğanay, Kayseri, Turkey
Annalise E. Zemlin, Tygerberg, S. Africa
Mehmet Faruk Geyik, Düzce, Turkey
Arindam Chakraborty, Mangalore, India
Meltem Taşbakan, İzmir, Turkey
Asuman Özkan, Istanbul, Turkey
Mesut Yilmaz, Istanbul, Turkey
Atıfet Yasemin Oztop, Sivas, Turkey
Mohammad Rafiqul Islam, Dhaka, Bangladesh
Atalay Şahin, Diyarbakır, Turkey
Murat Dizbay, Ankara, Turkey
Atilla Senih Mayda, Düzce, Turkey
Mustafa Sünbül, Samsun, Turkey
Ayşe Erbay, Yozgat, Turkey
Mustafa Gokhan Gozel, Sivas, Turkey
Ayse Ertürk, Rize, Turkey
Nazif Elaldi, Sivas, Turkey
Aziz Öğütlü, Sakarya, Turkey
Nguyen Thai Son, Hanoi, Vietnam
Bahri Teker, Istanbul, Turkey
Nuri Özkütük, Manisa, Turkey
Bansidhar Tarai, New Delhi, India
Oğuz Karabay, Sakarya, Turkey
Banu Sancak, Ankara, Turkey
Özgür Günal, Tokat, Turkey
Birgul Kacmaz, Ankara, Turkey
Ömer Coşkun, Ankara, Turkey
Cemal Üstün, Bolu, Turkey
Ömer Faruk Kökoğlu, Kahramanmaraş, Turkey
Çiğdem Banu Çetin, Manisa, Turkey
Ömer Tamer Doğan, Sivas, Turkey
Dra Graciela Castro Escarpulli, Hidalgo, Mexico
Güllü İştar Dolapçı, Ankara
Ebubekir Şenateş, Diyarbakir, Turkey
Reşat Özaras, Istanbul, Turkey
Ejaz Khan, Islamabad, Pakistan
Saim Dayan, Diyarbakir, Turkey
Emin Maden, Konya, Turkey
Salih Hosoglu, Diyarbakir, Turkey
Eric Nulens, Nijmegen, the Nederlands
Şebnem Şenol, Manisa, Turkey
Ertuğrul Güçlü, Sakarya, Turkey
Salih Cesur, Ankara, Turkey
Esra Kocoglu, Bolu, Turkey
Serdal Korkmaz, Sivas, Turkey
Farshid Fayyaz Jahani, Urumiye, Iran
Serhat Birengel, Ankara, Turkey
Gurdal Yılmaz, Trabzon, Turkey
Süleyman Yazar, Kayseri, Turkey
Haluk Vahaboğlu, İstanbul, Turkey
Tuna Demirdal, İzmir, Turkey
Harris Manzoor Khan, Aligarh, India
Thayumanavan Thangavelu, Coimbatore, India
Hasan Uçmak, Kahramanmaraş, Turkey
Zülal Özkurt, Erzurum, Turkey
Hayrettin Akdeniz, Bolu, Turkey
Zeliha Kocak Tufan, Ankara, Turkey
J Microbiol Infect Dis www.jmidonline.org Vol 3, No 4, December 2013
VI
JMID - Instructions for Authors
INSTRUCTIONS FOR AUTHORS
All manuscripts should be prepared as appropriate for Uniform Requirements for manuscripts submitted to Biomedical
Journals (http://www.icmje.org/). All submitted manuscripts
must be contributed solely to Journal of Microbiology and Infectious Diseases not be under consideration for publication
elsewhere. A copyright transfer statement must be signed by
all authors and accompany each submission.
Ethical Considerations
Manuscripts submitted for publication must contain a statement indicated that all prospective human studies have been
approved by the ethics Committee, have therefore been
performed in accordance with the ethical standards of 2008
Declaration of Helsinki. It should also be clearly stated that all
persons gave informed consent prior to their inclusion in the
study. Studies involving animals must have the animal ethics
committee approval and be conducted in accordance with the
care and use of laboratory animals standards.
Copyright agreement
All submitted materials become the property of Journal of
Microbiology and Infectious Diseases. If a submission is accepted for publication, authors will sign a copyright transfer
agreement. Copyright transfer agreement signed by all authors can be send to the Journal through email in a PDF file or
via fax. Transfer agreement form should be sent to Publication
office just after the acceptance of the manuscript. The publisher reserves the copyright. Materials published in Journal of
Microbiology and Infectious Diseases may not be reproduced
or published elsewhere without written permission of the
Publisher.
Manuscript preparation
Manuscripts should be arranged in the following order; Title
page, Abstracts, Key words, Introduction, Materials and Methods, Results, Discussion, Acknowledgements, References, Tables, Figure Legends, Figures. All of these sections should run
consecutively. The use of subheads is encouraged.
Journal of Microbiology and Infectious Diseases will consider
the publication of manuscripts dealing with clinical or laboratory investigations, including original investigations, case reports, invited reviews and letter to editors in the broad field of
Medicine. Animal or in vitro research will also be considered.
All manuscripts are subjected to peer-review. Manuscripts
should be written in English.
Title page: The title page should not contain abbreviations.
The title page should contain the full names and affiliations of
all authors and complete contact information (including address, phone number, fax number, email) of the corresponding
author.
Abstract: An abstract of no more than 250 words in length,
describing the aims, the results that were obtained from presented data and the conclusions. Abstract should be written
in a structured manner including Objectives, Materials and
methods, Results and Conclusions subheadings.
Key words: Up to five key words should be supplied following
the abstract. The key words should reflect the central topic of
the article and should be in compatible with Medical Subject
Headings (MeSH).
References: References should be numbered consecutively in
order of their appearance in the text and listed in numerical
order. Journal titles should be abbreviated according to Index
J Microbiol Infect Dis Medicus. The name of all authors should be written in the References, if six or less authors exist, and the first three authors
and et al. should be given if the number of authors exceeds
six. References with correct punctuation should be as follows:
Journals
- Anderson NJ, Abbott GD, Mogridge N, Allan RB, Maling TM,
Wells E. Vesicoureteric reflux in the newborn: relationship to
fetal renal pelvic diameter. Pediatr Nephrol 1997;11:610-616.
- Dunne FP, Elliot P, Gammage MD, et al. Cardiovascular function and glucocorticoid replacement in patients with hypopituitarism. Clin Endocrinol 1995;43:629-632.
Books
Hatch DJ, Sumner E, Hellman J. The Surgical Neonate: Anaesthesia and Intensive Care, 3rd edn. London: Edward Arnold,
1994:120-5.
Chapter in a book: Motoyama EK. Respiratory physiology in
infants and children. In: Motoyama EK, Davis PJ, eds. Smith’s
Anesthesia for Infants and Children, 5th edn. St. Louis: C.V.
Mosby, 1990:11-76.
A paper published online but not (yet) in print can be cited
using the Digital Object Identifier (DOI).
Tables and illustrations: Tables must be self-explanatory and
must not duplicate information in the text. Each table must
have a title and should be numbered in order of appearance
in the text. Any symbol and abbreviations used in the table
body must be defined in a footnote to the table. All figures
and pictures should be sent in JPG (or JPEG) file format as separate files.
Front page, Abstract, Main text, References and Tables should
be incorporated in one document file and submitted as a single file. Pictures and figures should be submitted as separate
files for each picture and figure.
All manuscripts should be submitted by online submission
at using login Author Pathway / Online Submission at www.
jcmid.org
Journal of Microbiology and Infectious Diseases
Copyright Transfer Agreement
The author(s) hereby affirms that the manuscript entitled: ......
............................................................................................................................
.. to be published in Journal of Microbiology and Infectious
Diseases is original, that all statements as facts are based on
author(s) investigation and research, that the manuscript does
not, in whole or in part, violate any copyright or any law of privacy or other personal or property right. The manuscript has
not been published elsewhere in total or in part; is not being
submitted and/or considered for publication in total or in part
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www.jmidonline.org Vol 3, No 4, December 2013
VII
CONTENTS
RESEARCH ARTICLE
• Expression of ESBL, MBL and AmpC β lactamases by extra intestinal Escherichia coli isolates: correlation with
treatment and clinical outcome
Arindam Chakraborty, Prabha Adhikari, Shalini Shenoy, Shrikala Baliga, Satish Rao, Dhanashree Biranthabail, Vishwas
Saralaya........................................................................................................................................................................................................................150
• Risk factors for nosocomial Acinetobacter bacteremia: a case-control study of intensive care unit patients
Özlem Tunger, Gönül Keleş, Şebnem Şenol S, Çiğdem Banu Çetin, Horu Gazi, Sümeyra Çoban S, İlkay Aras, Melek Çivi..... 157
• Impact of appropriate antimicrobial therapy on survival in patients with Acinetobacter baumannii-associated
infections
Yury Gorbich, Igor Karpov, Olga Kretchikova ...............................................................................................................................................163
• Resistance patterns and trends of extensively drug-resistant tuberculosis: 5-year experience
Amresh Kumar Singh, Anand Kumar Maurya, Manoj Kumar, Surya Kant, Ram Awadh Singh Kushwaha, Vijaya Lakshmi
Nag, Tapan N. Dhole...............................................................................................................................................................................................169
• Results of Entecavir treatment in patients with chronic hepatitis B
Şükran Köse, Melda Türken, Bengü Gireniz Tatar........................................................................................................................................176
• Feco-orally transmitted viral hepatitis in a tertiary care hospital in urban India
Monika Rajani, Manoj Jais....................................................................................................................................................................................181
• The incidence of fungal keratitis in Zagazig University Hospitals, Egypt and the value of direct microscopy and
PCR technique in rapid diagnosis
Reham Mohamed EL Shabrawy, Nissreen El Sayed El Badawy, Ashraf Wasfy Harb.......................................................................186
• Investigation of the Prevalence of vanA and vanB genes in vancomycin resistant enterococcus (VRE) by Taq
Man real time PCR Assay
Bahman Mirzaei, Taghi Naserpoor Farivar, Puran Juhari, Masume Aslani Mehr, Reyhane Babaei............................................192
• Frequency of active HCV infection among anti-HCV positive patients in selected districts of Khyber Pakhtunkhwa,
Pakistan
Sajid Ali, Bashir Ahmad, Ijaz Ali, Nourin Mahmood....................................................................................................................................199
BRIEF REPORT
• In-vitro susceptibility of linezolid against methicillin resistant Staphylococcus aureus at a tertiary care hospital
in Pakistan
Ali Khalid, Javaid Usman, Umaira Faiz, Fatima Kaleem, Afreenish Hassan, Maria Omair.............................................................203
• Prevalence of carbapenem resistant Enterobacteriaceae from a tertiary care hospital in Mumbai, India
Pravin K. Nair, Michelle S Vaz..............................................................................................................................................................................207
CASE REPORT
• Spontaneous recovery of haemophagocytic syndrome in an adolescent girl receiving anti-tuberculosis
treatment
Ramesh Bhat Yellanthoor, Annamma Kurien , Shruti Kakkar, MS Padma, Vamsi Sivarama Raju, Sherin George ..............211
• Cutaneous anthrax cases leading compartment syndrome
Emine Parlak, Ali Aydın, Mehmet Parlak.........................................................................................................................................................214
• Chronic osteomyelitis of skull associated with necrotic injury after trauma: A case report
Şua Sümer, Mehtap Karameşe, Ender Köktekir, Onur Ural.......................................................................................................................218
LETTER TO EDITOR
• Left retroperitoneal hydatid cyst disease and the treatment approach
Alper Avcı, Serkan Bayıl, Recep Tekin...............................................................................................................................................................222
J Microbiol Infect Dis www.jmidonline.org Vol 3, No 4, December 2013